I'm looking for some software to do some protein deconvolution from ESI mass spectrometry data. Ideally something that works with Windows and OSX, but I'm not picky. Anyone have any suggestions?
Try Skyline.
You can also use it to evaluate, QC, and quantify you ESI MS data.
OpenChrom is an open source software for the analysis and visualization of mass spectrometric and chromatographic data.
https://www.openchrom.net/
The aim of OpenChrom is to support a wide range of different data formats natively. The appropriate vendor converters can be installed from the OpenChrom marketplace. Their usage is free of charge. Moreover, OpenChrom supports several open formats to save the analysis results.
In addition, OpenChrom offers its own open source format (*.ocb) that makes it possible to save the edited chromatogram as well as the peaks and identification results.
Or try Decon2LS: http://omics.pnl.gov/software/decontools-decon2ls
With all due respect, all of these answers are fucking terrible. Please ignore all of them if you end up here: Go to MashSuite (Ge Lab @ University of Wisconsin) or MetaUniDeC (new as of 2018/2019). There is another one out there that is amazing, but getting it involves knowing the right people.
Benjamin C Orsburn :Is there something similar for oligonucleotides or does that MashSuite do the job? In that case I might contact the Ge Lab.
Benjamin C Orsburn Lol. I thought the same thing but not in such colourful language.
Jeremiah J Gassensmith Deconvolution of a composite peak into its individual peaks plays an important role in the interpretation of many types of graphs including XRD, XPS, FTIR, and PL etc. In this video, I have discussed how to deconvolute simple combined peaks, composite peaks and how to correct missing data in a given peak with the help of deconvolution. In the case you want to further ask about it, please do comment on the specific video, I'll respond to it shortly. I have provided the practice filee (OriginLab) here. Thanks
https://youtu.be/WX_X3XlbKRA
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