17 April 2024 2 10K Report

Due to factors outside of my control, peptides in my ESI-MS data have been ionised normally by protons ([M+2H], [M+3H]...) but also by sodium ([M+2Na], [M+3Na]...).

Is there a way to configure MaxQuant's andromeda search engine to look for the sodium-ionised peptides as well?

Thanks!

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