I need to analyze genes and their response towards ABA and other a biotic stresses. I wanna check if there are any ABA related or other Transcription factors elements in the promoter sequence of genes to which TF may bind and regulate the expression.
You may get something helpful in these databases.
UCSC genome browser, eukaryotic promoter database (EPD), Ensemble
Muhammad Sufyan Tahir Use MEME suite, http://meme-suite.org/
Choose the best one that suits your dataset
Hi Mr. Tahir,
I used to analyze promoter sequences with two online databases, which may useful for you. Best wishes.
1. PLACE - A Database of Plant Cis-acting Regulatory DNA Elements
https://www.dna.affrc.go.jp/PLACE/?action=newplace
2. PlantCARE
http://bioinformatics.psb.ugent.be/webtools/plantcare/html/
- Badges
- Science topic
- Similar topics
- Agricultural Science
- Horticulture