The SSR markers i used resulted to 2-10 alleles/bands per marker. I would like to ask what softwares can handle multi-locus analysis for genetic diversity? (PIC observed and expected heterozygosity etc.). I prefer to have my data in binary format. Also it will be very helpful if I can have a sample input data in binary format for the said software.
I have used the GenAlEx software but seems that It can't handle 2 or more loci and did my analysis for each bands. If anyone knows how to analyze multi-locus data in this program, please enlighten me.
Also, my data is from pooled DNA sample.
Thank you very much!
Thank you all for your recommendations!
Dr. @Ali Raza May I ask if you have sample input file for popgene? For example I have 10 bands/allele for SSR marker1 Thank you!
Dear Precious Guevarra I am really sorry. I did all this work 2 years ago, but at the moment I have no access to my old data. I will try to find some helping material for you. You can have a look on these articles, where I used popgen, xlstat and Powermarker for statistical analysis.
Article Evaluation of Genetic Diversity Among Exotic Sorghum (Sorghu...
Article Genetic Diversity Analysis of Brassica Species Using PCR-Bas...
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