Benjamin Karikari

5 Questions 12 Answers 0 Followers

Questions related from Benjamin Karikari

How to obtain R2 values from GWAS in GAPIT?

I have conducted GWAS with GAPIT using almost 400k SNPs and nearly 500 accessions, but I can locate the R2 values from the output, can anyone help me to resolve since GAPIT keep changing? The last...

26 March 2023 7,691 2 View

How to use VCFtools?

Hello everyone, I want to learn and use VCFtools to filter a very large genomic sequence. I will be very grateful if anyone here can guide me. Thanks.

25 February 2020 4,156 3 View

What could be the possible reason(s) why some SNPs are found out of Linkage disequilibrium block (LD B) during haplotype analysis in GWAS?

Dear All, I have conducted haplotype analysis to create LD block for my SNPs after GWAS. However, I find some significant SNPs outside the LD blocks, any probably explanation or education. Thanks

22 August 2019 9,080 4 View

How to to Genome sequences alignment?

I want to align 2 genomes of soybean cultivars and compare with the reference genome of William 82. Which platform(s) online can I use and what are the pros and cons? Thanks

25 October 2018 6,670 2 View

Can someone share NTSYS pc 2.02 software for genetic diversity analysis with me?

I want to analysis my SSR data for diversity study, I NTSYS pc 2.02 software, any help? My email [email protected]

06 August 2018 6,859 18 View