Can someone help me to find an easy way to calculate the area affected with A-beta plaques in images of DAB stained section brain sections.
you could use ImageJ for DAB staining to calculate area, however if you could get IF images of ABeta plaques Imaris would be better.
Hi
I would use colour segmentation plugin in imagej/fiji
http://bigwww.epfl.ch/sage/soft/colorsegmentation/
you can eventually preprocess the image with colour deconvolution plugin
http://imagej.net/Colour_Deconvolution
of course white balance is very important during photo acquisition.
Hope this will be useful.
Regs
Carlo
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