Ankit Agrawal

13 Questions 12 Answers 0 Followers

Questions related from Ankit Agrawal

Analysis of 3d image data as 2d?

I have a tif image of size around ~10 Gb. I need to perform object classification or pixel classification in this image. The dimension of image data has zyx form. My voxel size in x=0.6, y=0.6 and...

01 January 2019 9,043 8 View

What is the difference between Langevin and Nose hoover thermostat?

Dear all, I am using LAMMPS for coarse grain simulation of polymer chains. I want to control the temperature of the chains using thermostat. Which one should I chose? fit nvt or fix langevin...

09 September 2018 675 3 View

What is live FISH?

Hi, What is live Fluorescent In-situ hybridization imaging method? and how it is done?

02 February 2018 7,156 1 View

What is enhancer RNAs?

Hi, Nowadays, there are so many RNA detected so it is difficult to keep track of all the RNAs. Recently, I read about enhancer RNA that it is part of noncoding trancripts. I also read about...

01 January 2018 2,521 4 View

Volume of Chromosomes ?

Hello everyone, Does anyone knows where people have calculated the volume of human chromosomes in a nuclei??

05 May 2017 8,278 0 View

How to deform sphere region in LAMMPS?

Hi, Is there any way to deform the shape of spherical region in LAMMPS. If i am right then fix deform command only used for to deform the simulation box. Is anyone know how to deform the...

03 March 2017 3,305 0 View

Voronoi tesselation in 3d ?

Is any one know how to draw voronoi diagram in 3d. And how to compute volume and surface area of each cell. If any function is available in MATLAB for computing then its is good otherwise any...

10 October 2016 8,729 1 View

Difference between long poly A+ RNA and total RNA ?

RNA-seq data in ENCODE are available in these localization: cell, cytosol, nucleus etc. Is that means (cell localization = cytosol + nucleus) The main rna extraction methods are long poly A+, long...

07 July 2015 8,375 3 View

Next Gen Sequencing, Software, bioinformatics tools?

I found a nice review about current big data of biology and tools. So, I would recommend to read this paper by everyone "Computational solutions for omics data" who are working in Computational...

06 June 2015 5,139 0 View

Question related to transcripts, exons and splicing?

Can anyone explain me the difference between exons and transcripts and is this true that coding sequence (CDS) are the exons. Another question about the splicing suppose if you have E1, E2 and E3...

06 June 2015 7,609 5 View

Include the images from book into PhD dissertation

I want to include some images from "Molecular Biology of THE CELL 6th edition" book into my PhD thesis. What should I mention in my thesis when I copy any image from this book, so it should not...

01 January 1970 895 9 View

What is mean by stress for biological cell?

Sorry for asking layman question. I read some article where it mentioned that cell-scale stresses fluctuate rapidly and enabling cell rearrangements. What they mean by stresses for cell here how...

01 January 1970 4,302 3 View

What kind of questions can be asked from the tissue images of various staining?

Hi, I am completely new to experimental techniques. What kind of questions can be answered if we have the images of different staining for example: GFP, EDU, DAPI, LAMIN etc.? Can we measure the...

01 January 1970 6,194 2 View