The fusion protein I´m working with stains well with coomassie, but not with silver. After the fusion hydrolysis, the digestion subproducts are stained both with silver and coomassie, but I can´t detect the untreated fusion with silver.
Are all the silver staining steps being followed thoroughly and properly? What about all the reagents that you need for silver staining? I hope they're in good condition. Is it working in case of other samples too?
Hi Amanda, it's possible that your protein is binding the silver ions and preventing the reaction. This binding activity maybe it's primary structure dependent, so digestion products do stain.