I transfected GFP and did a western after that. However I found all my transfected GFP are around 150KD. Some may be aggregate and do not dissolve well.
You may have already checked this, but make sure that you have the appropriate stop codon at the end and that you're not reading into some nonsense sequence until it stops. I have not encountered this issue myself, but hopefully someone else can chime in. Best of luck!