Hello, can anyone explain me why MrBayes gives long terminal branches for different speciomens with the same sequences? I am studying multigene phylogeny and for some individual nuclear gene tress I get this picture.
Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...
03 March 2021 8,796 3 View
I would like to create a small guide containing the meanings of the names .. Thanks to everyone who cooperates with me in achieving it.
03 March 2021 5,266 4 View
Is There Any Feasible Method To Test The Efficiency Of Fluorescent Compounds Other Than UV Spectrometers ? Suggestions Would Be Appreciated !
02 March 2021 5,785 3 View
How to do Piezoelectric coupling in ANSYS-APDL or COMSOL between tapered substrate and rectangular piezoelectric patch? Piezoelectric coupling between the rectangular substrate and rectangular...
02 March 2021 9,833 3 View
I am going to have 3 different probes in my qPCR work that I am going to do. But I realized that the machine we have in the lab is a Rotor-Gene Q 2plex HRM Platform, saying it has green, yellow,...
01 March 2021 8,544 1 View
Is the electropolymerisation of polyaniline coating over stainless steel (SS) via Cyclic voltammetry technique is really adherant? Else how to improve the adhesion of the coating, whether any...
01 March 2021 8,220 2 View
I have created an Ice 1h crystalline structure and an Aluminium substrate structure and equilibrated both at 250K. Now I need to bring them together in a way that an adhesive bond is created....
01 March 2021 3,325 2 View
Does anyone have the experience of using Taq Man probes in the QIAGEN Rotar- Gene qPCR machine?
01 March 2021 5,311 1 View
When explaining substitution models, the substitutions are expressed as Q matrix. Why is the sum of the elements in a row zero?
28 February 2021 3,864 3 View
Hello, I have simulated a single battery cell using Thevenin equivalent circuit. For a battery pack, I have a large number of cells connected in series and parallel connections. Is there any way...
28 February 2021 2,116 1 View
Hi, I'm trying to run MrBayes 3.2.7 with a matrix of 37 species and 20561 nucleotides. I consistently receive the following error: MrBayes > Execute...
18 November 2020 3,867 3 View
In order to discover the best evolutionary model and partitioning scheme for Bayesian analysis, I am trying to run the command line iqtree -s aln_seqs.fas -p aln_seqs.nex -m MF+MERGE -mset...
17 November 2020 6,403 2 View
Hi, I am using mrbayes to generate phylogenetic trees. I am using command line version of software using the command "mb file.bay". In the output, i get .t, .p and .ckp file but do not get a .con...
16 November 2020 3,339 1 View
Using IQTREE I received the most optimum models for my data to analyse phylogenetic tree-reconstruction. IQTREE is able to use, aside from the Gamma distribution for heterogeneity across sites...
31 May 2020 2,352 4 View
I am trying to use MrBayes for the first time. I have downloaded and installed the MrBayes Directory to my Mac using HomeBrew. The directory seems to have all component files including the...
15 March 2020 3,548 2 View
Hello Experts, I was running Mrbayes with 112 Diptera species, 4 out group of 13 concatenated mitochondrial genes comprising 11835 bp characters for 200 million generations. After that checked...
23 February 2020 4,917 2 View
which software can be used to prepare nexus file for phylogenetics analysis in Mr Bayes? which format is best interleaved or sequential formats? Can you please explain?
22 February 2020 4,878 3 View
I'm attempting to run a parallel MrBayes analysis using MPI on a Linux machine with 33 processor cores (it's not a cluster, it's just the single multicore machine) but I can't get it to work....
01 February 2020 5,449 1 View
I have two tree files with the usual suffix .run1.t and .run2.t that you get as a result of a typical MrBayes analysis, but still haven't got a consensus tree (file ending .con) because the...
03 January 2020 2,882 3 View
Hello. I want to run an MCMC analysis on BayesTraits using a set of Bayesian trees I created using MrBayes. I want to run the analysis using both the consensus tree and a sample of 1,000 trees to...
28 July 2019 5,860 2 View