MrBayes
Hi Maria,
It seems that it is not very straightforward (at least for me) to apply this specific model in MrBayes. Instead you could just use GTR (+I) since all the other models (including TrN) are nested within it.
Best,
Denis
Dear all, I am looking for FACS markers to characterize my rat bone marrow-derived macrophages (M0). They were differentiated from monocytes with M-CSF. I am considering to use CD11b/c and...
15 July 2024 4,615 1 View
Occasionally we observe lack of staining in the inner part of a skin section processed with indirect immunofluorescence. Can be due to incomplete removal of the cryoprotectan during the wash? Any...
07 July 2024 8,200 2 View
Do you think the use of virtual reality with dyslexia students is good?
23 June 2024 8,437 2 View
I'm analysing a novel in which the said emotion is fundamental to understand the development of characters. Thank you in advance.
22 June 2024 4,859 8 View
I am doing a thematic analysis from interviewees done with my main group of interviewees. I also have done two interviews with another group of interviewees which provided interesting insights...
21 June 2024 3,305 6 View
las
19 June 2024 2,125 3 View
Hi, I am doing western blotting of isolated extracellular vesicles, and I have albumin and calnexin contamination that I don't know why. Is there any way to avoid it?
16 June 2024 9,907 4 View
I am going into my inductive thematic analysis with three research questions. In the results section, is it okay to structure it according to these three research questions, presenting the themes...
16 June 2024 1,116 3 View
Please note, that this is my first manuscript under the name Mária Čápová. Then I have been married, and my name change to Plachá, but I would like to have this article in my profile. Ontogenetic...
16 June 2024 7,178 0 View
I have a target of sequences for primer design for qPCR with taqman. The issue is that when I design a sense probe the probe makes dimers with forward and reverse with a very high probability at...
16 June 2024 1,506 1 View
Hello, can anyone explain me why MrBayes gives long terminal branches for different speciomens with the same sequences? I am studying multigene phylogeny and for some individual nuclear gene tress...
28 February 2024 2,709 0 View
The output file for the selected evolutionary models by ModelFinder is extremely confusing. This is what I got: PartitionModelPlen: 58s+tefcdn1_1+tefcdn1_2+tefcdn3_3+rpb1cdn1_1!ModelDNA!rates:...
27 December 2023 5,285 1 View
Looks like MrBayes has no longer a version for Mac, Mine is Sonoma 14.1.1 https://nbisweden.github.io/MrBayes/download.html ... am I right? Thank you for the response(s).
19 November 2023 5,269 1 View
mcmc ngen=3000000 append=yes Setting number of generations to 3000000 Setting append to yes Running Markov chain MCMC stamp = 0369747344 Seed = 1623279333 Swapseed = 1700407362...
18 November 2023 2,335 0 View
Hi! I'm doing a phylogenetic reconstruction in mrbayes, and I think that maybe there's something wrong with my script, because I asked for a 25% generations burn-in, but when I look at the run.p...
10 November 2023 9,929 2 View
How do I set TVMef+G in MrBayes for phylogenetic analysis?
25 October 2023 2,111 0 View
This error has occurred: Logging screen output to file "Trichoderma.3genes" Exiting mrbayes block Reading mrbayes block Setting outgroup to taxon "AH123_Fusarium_oxysporum_Root"...
20 May 2023 9,992 1 View
Is it possible to combine congruent ML (IQTREE) and BI (MRBAYES) phylogenetic trees to show both sets of support values? Any help is appreciated!
04 April 2023 4,674 1 View
Hi All, I was wondering if anyone has a compiled MPI version of MrBayes v3.2.7a that will run on Windows 11 that they would be willing to share? Or alternatively, does anyone know of a...
01 April 2023 8,111 3 View
I bought a new M2 Pro computer. I can't install MrBayes. I need help. I would be glad if you write in detail.
21 February 2023 6,723 0 View