Which threshold of the FDR can be fruitful and used in an association mapping?

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Fan Wang

Bonferroni correlation is much conserved, I would suggested 5% or 10% in GWAS for following up validations.

Gregor Steve

5% or 10% FDR????

I used 5% in my projects. Just realized you have 156 SNPs, I think Bonferroni correction is reasonable, FDR or Q value is usually used at genome-wide level.

thank you