Which program is good for finding the core genome and singleton genes of mulitple chloroplast genomes?

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Yunzeng Zhang

get_homologues is a good software for this purpose. the manual is here

http://161.111.227.80/compbio/soft/manual_get_homologues.pdf

Bruno Contreras-Moreira

If you choose to try GET_HOMOLOGUES note that the code and documentation moved to https://github.com/eead-csic-compbio/get_homologues