Does someone have a recent rodent phylogenetic tree (preferably in Nexus format or any other format usable in R) or knows a publication with a recent tree? Currently I am still using Fritz et al 2009.
Hi Sandra, for Muroid has this phylogeny: doi.org/10.1371/journal.pone.0183070
but to general rodent and mammals I use the phylogeny of Rolland et al. 2014: doi.org/10.1371/journal.pbio.1001775 ( is the Bininda-Emonds tree tree redated using dates from Meredith et al.)
Maybe it will be useful http://www.sciencemag.org/content/334/6055/521.abstract
http://www.sev-in.ru/sites/default/files/inline-files/%D0%9A%D0%BE%D1%81%D1%82%D0%B8%D0%BD_%D0%90%D0%B2%D1%82%D0%BE%D1%80%D0%B5%D1%84%D0%B5%D1%80%D0%B0%D1%82.pdf Best regards, Sergey
In this paper (https://doi.org/10.1371/journal.pbio.3000494), you can find a time-calibrated tree for 6,000 living species of mammals. In addition, credible sets of mammalian phylogeny are available for download at http://vertlife.org/phylosubsets.