Dear all,
I am preparing a protocol for membrane protein reconstitution in liposomes. In this protocol, the proteins are mixed with the lipids (DLPC), and the liposomes with the proteins are formed by removing the detergent with bio-beads. Then, I will use extrusion to size my suspension. I want to know how many lipids are lost in the extrusion process. In order to do so, I want to use a small percentage (0.3%) of fluorescent lipid in the preparation, and then measure the fluorescence of the extruded sample and the residue in the membrane after disruption of the liposomes with detergent. I am not sure which fluorescent lipid I should use, since there aren't many options with the same chain size as DLPC. However, I have a DiI dye available that can be used instead of the fluorescent lipid.
Is the DiI dye appropriate for this kind of measurement? Or should I use a fluorescent lipid instead? If yes, which one?
Thank you in advance.
Best regards,
Gustavo