I want to cut 25μm longitude section of mouse gastrocnemius muscle in order to stain the NMJ with synaptophysin and alpha-Bungarotoxin conjugated with Alex 594.
Here is the frozen section protocol I used: I dissect out the gastrocnemius muscle from mouse, rinse it with PBS, and then embed into a thin layer of O.C.T onto wood cork; prechilled the 2-methlbutane (in a glass beaker) in liquid nitrogen till the white precipitate starts to form at the bottom, then immerse my specimen completely in 2-methlbutane for 45 seconds, immediately lay my frozen specimen onto dry ice for about 15 mins; I store the specimen at -80c overnight, and put it into -20c cryostats 30 mins before sectioning.
However, it is really hard to cut complete and smooth 25μm longitude section without getting holes and crimping, even though the blade is brand new. Still, I did the IHC with synaptophysin, BTX and DAPI mounting media. only little area looks normal, most of the nucleus are not round shape but more like being dragged and twisted.
Is the problem of water crystalization or long freezing time? Which step can I make changes to avoid this improper freezing?
PS. I use snap freezing instead of 4% PFA fixation because the later one requires antigen retrieval protocol for my synaptophysin antibody.