What version of R will work best with Arelquin and how to connect Rcmd.exe?

More Asif Laldin's questions See All

There is no demonstrable evidence of the evolutionary link between genetic similarities and an evolutionary shared past ancestry.?

Please respond to this quote above. This was written to me in response to a discussion on biological species concepts and evolutionary

05 June 2019 3,521 6 View

What are the pitfalls of using RStudio IDE for python as opposed to Sypder?

Are there any issues that arise when using RStudio for Python. Have been using Spyder but for simplicity's sake wanted to keep only one window open.

04 May 2019 4,399 1 View

Could somebody please provide me with a link or an .R script explaining how to align a FASTA file using MUSCLE in R?

An R script or a link to sample code would be highly appreciated.

11 December 2018 8,284 0 View

What is/are some empirically backed evidence/arguments against Murray and Hernstein's 'The Bell Curve,'?

Trying to find papers that have effectively refuted any arguments put forward in the book.

06 July 2018 1,826 0 View

What are some methods to presenting haplotypes without using graphical networks?

As some of the samples are incredibly diverse they do not allow for a clear, concise and legible haplotype network. Would it be appropriate to create a histogram of haplotype frequency. While...

06 July 2018 8,625 6 View

Will R or Python allow me to pull DNA sequences from NCBI alongside data such as location and date published?

Is there a way to automate such a process whilst having all the additional data of the sequence stored in a nice legible manner?

05 June 2018 2,688 4 View

How to export High quality Haplotype Network Image in R?

I have previously used DnaSP -> NEXUS file -> PopART which produced high quality outputs and the ability to move the network and placed in a way you so desire. However, creating nexus files...

05 June 2018 380 3 View

Do you think the emphasis placed on novelty of research by journals is inherently problematic?

This was sparked by a quote I read ' The way that scientific publishing fetishizes novelty is gross. That's the business model of tabloids, not scientific journals. ' -Ed young

05 June 2018 2,729 6 View

How can graphics outputs for Arelquin and R (R Lequin) be produced in grayscale?

Is there an option to have non-coloured outputs?

05 June 2018 1,156 0 View

For diagnostic PCRs does the targeting of indels hold more discriminatory power and specificity than targeting SNPs or other base pair variation?

Does anybody have any direct experience of this or know of any studies which have compared to two targeting methods of PCRs?

05 June 2018 217 3 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View

Hassan Nima

hope this link is useful

https://cran.r-project.org/bin/windows/base/rw-FAQ.html

regards

Khalid Al-Salhie

Interesting

Miranda Mortlock

The Arlequin 3.5 website state this :

New R functions for R package ver 3.01. The zip file contains a directory called Rfunctions, which needs to replace the Rfunctions directory located in your Arlequin home directory.

Maybe get in contact with the Arlequin team to assist you.

Michal Czyz

Never worked with Arlequin but you might find this discussion usefull:

https://www.biostars.org/p/263865/

Asif Laldin

I've figured how to do this. If anybody comes across this thread and requires some help please do ask.

Best