Hi everyone,
I'm fairly new to DKI tractography. I have used ExploreDTI for DTI tractography before and I know a few software packages that work well for DTI, but I wanted to use specific software packages for DKI tractography. I have used DKE to estimate the tensor and it works fine for that aspect, but unfortunately, the tractography module does not work well. I was wondering if anyone here has used any software packages that are specifically designed for DKI tractography (or are at least capable of doing that, especially resolving the crossing fibers issues, etc.) and they have got reasonable outputs. I'd appreciate if you can introduce me some of those packages.
Thanks a lot,
Ehsan
Dear Ehsan,
You can consider the DTI sutdio or FSL vmware. I think both work well
Good Luck
We've recently added DKI into Dipy: https://github.com/nipy/dipy/blob/master/doc/examples/reconst_dki.py
DKI tractography is still work in progress, though: https://github.com/nipy/dipy/pull/685
I used the latest DKE version, http://academicdepartments.musc.edu/cbi/dki/dke.html, which has embedded the fiber tractography module based on DK tensor.
Thanks for your answers everyone.
Chen, how was your experience with the fiber tracking module on DKE? I didn't get a good result off of it.
- Badges
- Science topic
- Similar topics
- Mathematics
- Statistics