we have doped metal ions like gold, silver with organic molecules. the doped molecules are to be docked with proteins. kindly suggest a software for it
Various software tools are available for docking metal ions with proteins, such as RosettaLigand, idock, Autodock, and MIB. These tools have distinct requirements and procedures for this process. For instance, RosettaLigand needs an SDF file containing the small molecule ligand to be docked and a PDB file containing the protein where the ligands should be docked.