For a very long time now, Colchicine has been used to induce diploidy in higher plants, doubling the whole genome. It does not seem to do so in mammalian tissue, as evidenced by its common use as a gout medicine in humans. I have never had time to follow up on this and would be curious to hear what it would do to a yeast. Here is an example of a relevant plant publication.
Perhaps looking up its mode of action would give you a lead as to what kind of stress would cause such a thing in nature. Domestic wheat seems to have duplicated its genome naturally on occasion and includes several ploidy varietys (species?). I hope this helps.