Creating workflows in Python. I would like to have your opinions about snakemake?

I would like to know the advantages and the disadvantages of snakemake. Is a there a tutorial with multi-threading options? If you have already used snakemake, it would be useful for me if you can...

11 December 2015 1,625 0 View

Is there an alternative for the python module gzip?

I would like to read directly (in python) gzipped files without extraction. Can someone suggest me an other module than gzip? because currently, gzip takes like AGES before It gives me the output...

03 April 2015 4,150 2 View

What is the role of rhodamine 123 in detecting apoptosis?

Thanks in advance.

10 November 2014 2,526 11 View

Can someone recommend research papers or reviews regarding MMP2, MMP3, MMP9, TIMP1&2?

Interaction between MMP & TIMP

04 May 2014 4,611 6 View

Can we find out the different interactions between proteins; especially between amino acids using bioinformatic tools? How?

What is the best way to find out these interactions? Data analysis or observation or the combinaison of these two?

04 May 2014 5,121 6 View

What is the best way to represent the dynamical structure of a protein?

I have a lot of interaction data between two proteins. But, I don't know what is the best way to analyse and represent these data. By interaction data, I know which aminoacid interact to have a...

04 May 2014 4,435 1 View

Is there a software to get mutated proteins?

I would like to change an aminoacid in a protein sequence. Can someone suggest me a software? Can I change the sequence directly in the pdb file? If yes, how?

04 May 2014 6,818 8 View

Can I use the software named AUTODOCK for protein docking?

Please suggest me other softwares if you know.

04 May 2014 350 8 View

Which is the best software to align sequence?

It can be a DNA sequence, protein sequence.

04 May 2014 7,268 6 View

Which is the best software to simulate an interaction between an enzyme and its substrate?

Enzymology

03 April 2014 7,289 10 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

i have some problem with chtMultiRegionSimpleFoam

--> FOAM FATAL ERROR: Maximum number of iterations exceeded From function Foam::scalar Foam::species::thermo::T(Foam::scalar, Foam::scalar, Foam::scalar, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar) const) const [with Thermo = Foam::hConstThermo >; Type = Foam::sensibleEnthalpy; Foam::scalar = double; Foam::species::thermo = Foam::species::thermo >, Foam::sensibleEnthalpy>] in file /home/ubuntu/OpenFOAM/OpenFOAM-4.1/src/thermophysicalModels/specie/lnInclude/thermoI.H at line 66. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) at ??:? #1 Foam::error::abort() at ??:? #2 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::calculate() at ??:? #3 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::correct() at ??:? #4 ? at ??:? #5 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #6 ? at ??:?

24 March 2021 0 0 View

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View

Do we need to write protocol for a second study of a systematic review that has been registered and published?

I have conducted and published a systematic review and meta-analysis research with the topic related to public health and health pomotion (protocol was registed in PROSPERO). Now we want to...

03 March 2021 8,920 3 View

How to increase a model accuracy ?

dear community, my model is based feature extraction from non stationary signals using discrete Wavelet Transform and then using statistical features then machine learning classifiers in order to...

03 March 2021 6,994 5 View