I would like to know the advantages and the disadvantages of snakemake. Is a there a tutorial with multi-threading options? If you have already used snakemake, it would be useful for me if you can share your experience.
I would like to read directly (in python) gzipped files without extraction. Can someone suggest me an other module than gzip? because currently, gzip takes like AGES before It gives me the output...
03 April 2015 4,261 2 View
Thanks in advance.
10 November 2014 2,641 11 View
Interaction between MMP & TIMP
04 May 2014 4,695 6 View
I have a lot of interaction data between two proteins. But, I don't know what is the best way to analyse and represent these data. By interaction data, I know which aminoacid interact to have a...
04 May 2014 4,531 1 View
What is the best way to find out these interactions? Data analysis or observation or the combinaison of these two?
04 May 2014 5,218 6 View
I would like to change an aminoacid in a protein sequence. Can someone suggest me a software? Can I change the sequence directly in the pdb file? If yes, how?
04 May 2014 6,900 8 View
It can be a DNA sequence, protein sequence.
04 May 2014 7,397 6 View
Please suggest me other softwares if you know.
04 May 2014 465 8 View
Use of the software charmm.
04 May 2014 546 3 View
Enzymology
03 April 2014 7,376 10 View
I'm currently exploring the application of Python in textile engineering, specifically in areas like data analysis, process automation, and the development of smart textiles. I'm interested in...
10 August 2024 7,429 2 View
Request Python code from this article : Gender equity of authorship in pulmonary medicine over the past decade. THANKS!
08 August 2024 6,242 2 View
Visual Studio Code (VS Code) has become a popular choice among developers for several reasons: 1. **Free and Open Source**: VS Code is free to use and open source, making it accessible to...
07 August 2024 7,013 4 View
I need the python code to forecast what crop production will be in the next decade considering climate and crop production variables as seen in the attached.csv file.
05 August 2024 2,977 3 View
Hello everyone, I am currently working on a research project that aims to integrate machine learning techniques into an open source SIEM tool to automate the creation of security use cases from...
04 August 2024 3,196 2 View
In molecular dynamics simulation, to get FEL analysis, I got an error. My Python version is 3.10.7. My input files are made with a lower version of Python. But the final command to generate the...
23 July 2024 5,646 2 View
I am now developing a python module for ms2 database searching, would like to realize a function that similar to what Xcalibur did, choose multiple mass spectra and get an averaged spectra. But...
22 July 2024 3,975 1 View
Hello, dear RG community. Personally, I have found Xarray to be excruciatingly slow, especially for big datasets and nonstandard operations (like a custom filtering function). The only suggestion...
15 July 2024 4,705 2 View
There exists a neural network model designed to predict a specific output, detailed in a published article. The model comprises 14 inputs, each normalized with minimum and maximum parameters...
14 July 2024 2,714 3 View
I have finish my MD simulation of a ligand-protein complex and I want to analyse the trajectory including the geometry of a metal. I have found that FindGeo tool could help with its python...
22 June 2024 4,045 4 View