Is there an alternative for the python module gzip?

I would like to read directly (in python) gzipped files without extraction. Can someone suggest me an other module than gzip? because currently, gzip takes like AGES before It gives me the output...

03 April 2015 4,150 2 View

What is the role of rhodamine 123 in detecting apoptosis?

Thanks in advance.

10 November 2014 2,526 11 View

Can someone recommend research papers or reviews regarding MMP2, MMP3, MMP9, TIMP1&2?

Interaction between MMP & TIMP

04 May 2014 4,611 6 View

Can we find out the different interactions between proteins; especially between amino acids using bioinformatic tools? How?

What is the best way to find out these interactions? Data analysis or observation or the combinaison of these two?

04 May 2014 5,121 6 View

What is the best way to represent the dynamical structure of a protein?

I have a lot of interaction data between two proteins. But, I don't know what is the best way to analyse and represent these data. By interaction data, I know which aminoacid interact to have a...

04 May 2014 4,435 1 View

Is there a software to get mutated proteins?

I would like to change an aminoacid in a protein sequence. Can someone suggest me a software? Can I change the sequence directly in the pdb file? If yes, how?

04 May 2014 6,818 8 View

Can I use the software named AUTODOCK for protein docking?

Please suggest me other softwares if you know.

04 May 2014 350 8 View

Which is the best software to align sequence?

It can be a DNA sequence, protein sequence.

04 May 2014 7,268 6 View

What is the use of potential energy distribution (PED) that can be got by the software CHARMM and how can it be exploited?

Use of the software charmm.

04 May 2014 444 3 View

Which is the best software to simulate an interaction between an enzyme and its substrate?

Enzymology

03 April 2014 7,289 10 View

How to repeat an operation on an atom selection for multiple times in PyMol?

Hi, I am trying to construct a multi-layer fibril structure from a single layer in PyMol by translating the layer along the fibril axis. For now, I am able to use the Translate command in PyMol...

02 March 2021 4,569 4 View

How to define and get results (stresses) for certain points of a model in abaqus, using python? When the size of the model changes?

I want to do a parameter study of a aixsymmetric cylinder in Abaqus. I want to create several jobs where I get the stresses for 3 different points in my model. These points are defined. I wrote a...

01 March 2021 10,078 1 View

Which is suitable for use with Python? MySQL or SQL Server?

Which is suitable for use with Python? MySQL or SQL Server? What is your suggestion?

01 March 2021 3,422 3 View

Can anyone provide the Support vector regression code structure of LIBSVM MATLAB or python ?

Please, if Gaussian Parameter optimization is possible in this code structure

28 February 2021 278 3 View

How to modify Johnson cook equation in ABAQUS?

I wanted to add an extra parameter to the existing Johnson cook equation in the ABAQUS simulation. How to add those extra parameters. Ref: A modified Johnson-Cook material model with strain...

28 February 2021 4,841 3 View

No module named 'tensorflow.keras.backend.tensorflow_backend' ?

System Description Cuda 11.2 GeForce GTX 1080ti tensorflow version 2.4.1 keras version 2.2.0 python version 3.8 I was getting the below error when I try to run my code on the...

25 February 2021 6,673 2 View

Implementation of chance-constrained optimization problem via scenario approach?

23 February 2021 7,826 2 View

Bayesian decision trees and bayesian regression trees in Python and/or R?

I am looking for implementation of bayesian decision trees and bayesian regression trees in Python and/or R.. Do you know if the existing libraries support this

23 February 2021 6,689 3 View

Are there packages (R or Python) for simple models (bucket?) to assess soil water content?

Hi everyone. I am researching droguht effects on soil water drought. I am looking for already implemented functions in R or Python to estimate soil water content from precipitation,...

21 February 2021 2,084 1 View

How can I retrieve FASTA sequence from gene ID or UID of a Gene ? I have GeneBank IDs ?

I treid to use Entrez Batch, but it redirects me to NCBI site. Is there any script of Linux or Python through which I can download Fasta sequence of list of gene ID ?

21 February 2021 7,783 12 View