What is the script of the membrane proteins simulations in NAMD?

More Madhu Sudhana Saddala's questions See All

The homology model protein is how much reliable to X-ray crystallographic model protein?

09 October 2015 2,686 0 View

What is free calcium? How can estimate?

07 August 2014 7,810 0 View

I want to calculate a multiple sequence alignment for Nseq sequences. How many pair-wise alignments will I have to calculate ?

07 August 2014 5,543 0 View

How do I perform pattern mining of 12 nucleotide sequences (dataset) in MATLAB?

See above

07 August 2014 2,091 2 View

How do I selectively download 3 fields from every record in UniProtKB?

See above

07 August 2014 7,040 2 View

How can I calculate the RMSE in 2D QSAR studies?

See above.

04 May 2014 1,287 2 View

How can I create a parameter file in NAMD tool?

03 April 2014 4,845 0 View

Can anyone recommend a protein ligand complex dynamics simulations in NAMD tool?

Dynamics simulations.

03 April 2014 3,008 5 View

Which tool is best for MD simulations?

see above

02 March 2014 324 8 View

In silico methods of cancer

There is an upcoming techniques

02 March 2011 6,363 5 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

Arena simulation - how do i model the following model in ARENA (see description) (new to ARENA)?

Hello, I'm fairly new to ARENA and I have the following problem: I have two queues in which, in each queue, a different order type arrives (both having an arrival rate of exponential 10). Order...

02 March 2021 2,431 3 View

Why are the velocities so high in my Boussinesq approximation Fluent simulation?

Hello, I have a mechanism where air rises due to convective flows. In this simulation, nothing is driving the air except this. I understand that the Boussinesq approximation only works for small...

02 March 2021 4,910 3 View