How do I perform pattern mining of 12 nucleotide sequences (dataset) in MATLAB?

More Madhu Sudhana Saddala's questions See All

The homology model protein is how much reliable to X-ray crystallographic model protein?

09 October 2015 2,793 0 View

What is free calcium? How can estimate?

07 August 2014 7,896 0 View

I want to calculate a multiple sequence alignment for Nseq sequences. How many pair-wise alignments will I have to calculate ?

07 August 2014 5,658 0 View

How do I selectively download 3 fields from every record in UniProtKB?

See above

07 August 2014 7,140 2 View

How can I calculate the RMSE in 2D QSAR studies?

See above.

04 May 2014 1,398 2 View

How can I create a parameter file in NAMD tool?

03 April 2014 4,954 0 View

Can anyone recommend a protein ligand complex dynamics simulations in NAMD tool?

Dynamics simulations.

03 April 2014 3,114 5 View

Which tool is best for MD simulations?

see above

02 March 2014 419 8 View

What is the script of the membrane proteins simulations in NAMD?

Membrane protein simulations.

08 September 2013 5,319 3 View

In silico methods of cancer

There is an upcoming techniques

02 March 2011 6,473 5 View

Can I base on reverse DNA sequences to perform alignment, convert to amino acids and GenBank submission?

I have reverse sequences (AB1 format), can I base on reverse DNA sequences to perform nucleotide alignment, convert nucleotides to amino acids and deposit the sequence in GenBank database?

11 August 2024 5,138 1 View

How to confirm the site-directed mutagenesis result without performing NGS?

I'm cloning a fragment of 3200 nts into plasmid. The cloning was successful, however, 02 amino acids were mutated. Now I want to fix these 02 aa by site-directed mutagenesis technique using...

08 August 2024 4,645 2 View

Why after performing site directed mutagenesis ,I don't see any colony after transformation?

I want to introduce a point mutation (change in one nucleotide) into my gene of interest (DNA binding domain) I have designed primers as recommended on the Data sheet of the kit : -Both primers...

05 August 2024 9,059 3 View

Does anyone have issues using Prepman Ultra reagent for MicroSeq ID bacterial, fungal and yeast sample preparation?

I have been attempting to extract DNA from Bacterial, Fungal and Yeast banked samples (>1e7 cells) using Prepman Ultra reagent and I seem to be struggling to obtain a sequence. Although the...

01 August 2024 2,079 0 View

Help on understanding the implementation of Mori Tanaka method on MATLAB?

I am new to Micromechanics and having similar problem with understanding the implementation of the formula's. I would appreciate if anyone can guide me on how to go about getting a scalar value...

30 July 2024 969 0 View

Inquiry on Maximum Nucleic Acid Volume for 2.5 mL Liposome Solution?

I am currently working on a project involving liposomes and need to determine the maximum volume of siRNA that can be added to a 2.5 mL liposome solution with a total lipid concentration of 10...

30 July 2024 6,420 1 View

Should the amount of DNA input used for ChIP-seq library preparation be matched between the control and experimental groups?

Hi all. As a beginner in ChIP-seq experiments, I hope you understand that the following questions might be somewhat basic. I am planning to perform ChIP-seq or MeDIP-seq analysis to investigate...

28 July 2024 6,938 1 View

Please, what is the memory consumption of the Matlab function quad tree decomposition procedure [S = qtdecomp(I)] with respect to the input set I?

27 July 2024 5,455 2 View

How can I get old refernce in geomorphological mapping?

how can I read Waters, R. S. 1958. Morphological mapping. Geography 43 :10-17 from internet? note: not in google or resaearch gate

26 July 2024 7,813 3 View

How to merge two or more linkage maps?

I have three linkage maps that needs to be integrated to create a consensus map for QTL mapping.

25 July 2024 6,505 2 View