I am looking to explore my alignments and tree data more carefully and I was wondering if there was any genomic statistical packages that may give me more inside into the data I generated in the alignments. I'm not sure if this I need the additional analysis, but I am interested in learning new ways in how to analyze my data. I have heard that there is a JMP Genomics add-on but I am not failure with it. Does any one have any advice or experience with JMP Genomics or any other software that might be able to help me understand what all I could do?