Specifically, what is the difference between
A) POPDATA=1, LOCPRIOR=1, LOCDATA=0, LOCISPOP=1 and
B) POPDATA=0, LOCPRIOR=1, LOCDATA=1, LOCISPOP=0 ?
For the clustering algorithm and calculating Q, I think it is the same. In both cases, the Locprior model uses the sampling location information, only from formally different sources (POPDATA or LOCDATA column). The further difference is that the A settings generate Q values not only for individuals but also for pre-defined populations.
Am I right?
Thank you.