I want to do transcriptome and phosphoproteome analyses of the same sample and have limited material. So a simultaneous extraction method for both (RNA and protein), such as Trizol or Methanol/Chloroform extraction would be the way to go. Anybody here with experience using one or the other protocol? Which one would you recommend for a small sample amount? Are they both suitable for high-quality transcriptome and phosphoproteome analyses? Any suggestions are appreciated.