What is the best DNA barcode to investigate genetic diversity of Rice landraces?

01 January 1970 0 731 Report

I'm studying the genetic diversity of upland rice varieties from Meratus mountains, Indonesia through the SNP profilling (DNA barcode).

As we know, DNA barcode (rbcl, MatK, trnF-L, ITS, and IGS) has been used since a decades ago for plant. However the study on Rice still limited.

I wan't to know what is the best marker, especially SNP marker to investigate its genetic diversity?

Do you have an experience in using DNA barcode for Rice?

Thank you

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