We are trying to understand how capability of 3D tissue scaffolds made of polymers and ceramics is affected by their internal architectures. Currently, we have obtained a series of micro-CT images (about 300) of a polymer-made scaffold. We want to use imageJ to achieve 3D reconstruction and get to know overall porosity, surface area and distribution of pores and ratio between open and closed pores.
I wonder if there are any imageJ plugins can do this. If not what other software can be used?
Your help will be very appreciated.