Greetings

I´m currently downloading the genome AaegL5.3 and the anotation of Aedes aegypti from vectorbase https://vectorbase.org/vectorbase/app/downloads/Current_Release/AaegyptiLVP_AGWG/nonetheless I dont know which of the gff files do I need to use for transcriptomics analysis of mRNA: Orf50.gff or VectorBase-60_AaegyptiLVP_AGWG.gff

If this helps my purpose is to identifie differential expressed genes from two Aedes aegypti lines resistant to two pyretroids, and i have already have my data I just need to know which one to use.

Thanks in advance

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