I'm using Fenton reaction for protein oxidation. To stop Fenton reaction I used 10% TCA, and then centrifuged samples three time at 1000 RPM. then, added phosphate buffer on protein pellets at the bottom of tube and dissolved them into buffer. Finally, I put samples into freezer (-20) to use for different assays like carbonylation assay, DTNB assay and so on. I wonder if TCA has an effect on my different by products which has produce on the protein through Fenton reaction? 

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