What are the percentages of a certain base appearing at a certain position in a splice donor site?

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Sebastian Swirski

Is this correct: http://www.life.umd.edu/labs/mount/RNAinfo/matrices.html ?

Abhishek Kumar

yes, normally this correct,

3' splice sites: CAG|G

5' splice sites: MAG|GTRAGT where M is A or C and R is A or G

also check in attached papers

Article Multiple gains of spliceosomal introns in a superfamily of v...

Article Spliceosomal Intron Insertions in Genome Compacted Ray-Finne...

Thanks a lot!