Currently I use Leica BOND Plus slides to mount 5 micon thick FFPE sections of mouse knee joints. These have been fixed in PFA and decalcified in EDTA by experienced researchers, and have been embedded using the following programme in an automated tissue processor:

70% EtOH – 2h

95% EtOH – 2h

100% EtOH – 2h (x3)

Xylene – 2h (x3)

Histowax – 1h (x3)

I dry the sections overnight at 37-40 C on a drying rack, then bake at 65C for 3h and leave the sections to set at RT.

I dewax using the following protocol:

Xylene - 5 min (x3)

100% EtOH - 5 min (x2)

95% EtOH - 5 min

70% EtOH - 5 min

50% EtOH - 5 min

1x PBS - pause point until steamer reaches 99C

Then I proceed with antigen retrieval at 99C in a steamer:

dH2O - 10 sec dip

Tris-EDTA, pH 9.0 - 10 min

1x PBS - pause point at RT.

After the steamer steps, bone and cartilage seem to have fallen of the slide, folds are introduced, etc.

As for the other tissues, the muscle seems to have some folds, while the marrow is mostly intact and does not detach.

I've tried in parallel a different buffer (Citrate buffer, pH 6.0), an overnight 60C incubation in a water bath, as well as a pressure cooker. In all cases the same effect is observed, including if I just stick my tissues in water at 99C for 10 min. This leads me to believe the bone and cartilage tissue is not sticking properly to the slides.

Do you have any tips/recommendations on what I could be doing wrong?

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