Is there a database about which proteins transcribed by which transcription factors and also if my target protein is a transcription factor, it transcribes which proteins?
The database: http://www.transcriptionfactor.org/index.cgi?Home
Also, if you have a DNA sequence (FASTA), where you want to look for enrichment for some TFs motifs, you can check this site: http://meme-suite.org/db/motifs