How can I download germline variants info from TCGA?

I have access to controlled data. I have done this some years ago, but can't seem to figure out the new interface. Ideas?

09 October 2016 6,677 3 View

What do you think about the Lancet letter regarding Gaza?

Below is a letter I have sent to Elsevier, the publisher behind Lancer: To Mr. Reller, Vice President for Global Corporate Relations at Elsevier I share the feelings expressed in the letter sent...

09 October 2014 5,648 1 View

Is anyone working on Personalized (precision) cancer medicine?

We are working on a new wiki for precision cancer medicine. If you are working in the field, please let me know what you think (registration is required): http://rubinlab.bgu.ac.il/pcm/

07 August 2013 584 2 View

Is anyone familiar with running weka with a sun grid engine?

I am trying to use weka on our cluster, running sun grid engine. I installed Weka myself without root permission, and added CLASSPATH info to .rcsh. When I run a shell command invoking WEKA (with...

07 August 2013 2,221 4 View

Is my SNP on some commercial platform?

Does anybody know how to check if a new SNP is on ANY chip? I am looking for experiments in which a specfific SNP has been evaluated.

10 November 2012 894 4 View

How to align short reads to repetitive regions?

I am trying to align NGS data to repetitive regions. Straight-forward use of tools such as BWA fails. Any suggestions?

08 September 2012 1,295 6 View

Why are some nodes in Mega5 NJ tree shown without boostrap values?

My students noticed that you occasionally get no bootstrap values in a Mega5 tree. Bug? filtering? Any ideas? I attach the FASTA of the sequences used to generate the tree. Eitan

05 June 2012 9,291 15 View

How to compare the quality of clustering solution for the same dataset?

I always wondered how to test for the significance of clustering results. Now I have an urgent need. I want to show that when my input is organized in a biologically meaningful way. For that, I...

05 June 2012 2,977 15 View

Did anyone test the new compression tools for BAM format?

We have developed our own tool for compression, which saves ~70% while creating "regular" BAM files. But we are seeing all these new formats that are space economic - but I want to hear from...

04 May 2012 5,974 1 View

The math behind Oncotype?

01 January 1970 9,474 0 View

New Journal, "Integrative Psychological and Behavioral Science" -- do you not know, and have you not seen, this done before?

Question to you and THEM, the New Journal, "Integrative Psychological and Behavioral Science" -- do you not know, and have you not seen, this done before? There appears to be a core problem for...

02 March 2021 3,024 2 View

How to add a journal?

I would like to know how to register the journal Flora Montiberica (ISSN 1138-5952 - eISSN 1988-799X) in Research Gate.

02 March 2021 8,156 2 View

Is it possible to remove a preprint posted by a journal which is already rejected?

As we know many journals are posting preprints (DOI) in advance before the peer-review process. However, there is no guarantee that the preprints get published. The journal's reviewers undergo the...

01 March 2021 5,778 2 View

No title

Hi, I have several doubts about one paper (Systematic Literature Review) that was rejected. The main topic is Single-Board Computers in engineering education during the period 2010-2020. The...

01 March 2021 9,015 3 View

How to figure out easily the right journal with the right scope for your paper?

According to my experience most of the selected journals during paper submission are based on journal text matching suggested results from Springer, Elsevier,,,Etc. then the manuscript happened to...

01 March 2021 1,786 3 View

Any research paper call for publication related to management or finance or economics?

It should be standard journal (Indexed)

01 March 2021 8,379 1 View

What is the most reliable source to get Impact factor of journals?

Source to get Impact factor of journals

01 March 2021 6,654 2 View

How to highlight novelty in your research paper?

I have come up with a method and had written a paper on it. Paper got rejected by a journal stating that there is no theoretical novelty. I am kind of confused on why the novelty that I am able to...

28 February 2021 2,393 8 View

Is Journal of Agricultural Research a predator?

it is published by Juniper

28 February 2021 354 4 View

How can I publish a manuscript in free or low cost journal with good H-Index?

Dear all I am going to publish my manuscript which is from my thesis in a good H-Index journal but I found them very expensive(I don't have financial support) based on the exchange currency of my...

28 February 2021 7,800 6 View