11 Questions 48 Answers 0 Followers
Questions related from Eitan Rubin
I have access to controlled data. I have done this some years ago, but can't seem to figure out the new interface. Ideas?
10 October 2016 6,775 3 View
Below is a letter I have sent to Elsevier, the publisher behind Lancer: To Mr. Reller, Vice President for Global Corporate Relations at Elsevier I share the feelings expressed in the letter sent...
10 October 2014 5,723 1 View
I am trying to start a new journal. I hope to make it free-open access if I can raise funds for that. Does anyone have any idea how much that should cost? What's the minimal stuff? 1 full timer?...
08 August 2014 4,908 0 View
I am trying to use weka on our cluster, running sun grid engine. I installed Weka myself without root permission, and added CLASSPATH info to .rcsh. When I run a shell command invoking WEKA (with...
08 August 2013 2,285 4 View
We are working on a new wiki for precision cancer medicine. If you are working in the field, please let me know what you think (registration is required): http://rubinlab.bgu.ac.il/pcm/
08 August 2013 648 2 View
Does anybody know how to check if a new SNP is on ANY chip? I am looking for experiments in which a specfific SNP has been evaluated.
11 November 2012 968 4 View
I am trying to align NGS data to repetitive regions. Straight-forward use of tools such as BWA fails. Any suggestions?
09 September 2012 1,387 6 View
My students noticed that you occasionally get no bootstrap values in a Mega5 tree. Bug? filtering? Any ideas? I attach the FASTA of the sequences used to generate the tree. Eitan
06 June 2012 9,378 15 View
I always wondered how to test for the significance of clustering results. Now I have an urgent need. I want to show that when my input is organized in a biologically meaningful way. For that, I...
06 June 2012 3,050 15 View
We have developed our own tool for compression, which saves ~70% while creating "regular" BAM files. But we are seeing all these new formats that are space economic - but I want to hear from...
05 May 2012 6,047 1 View
I am going to present the Oncotype paper in a course, but in the NEJM paper they say “For this purpose, we used correlation analysis, dimension reduction, Martingale residual analysis, concordance...
01 January 1970 9,550 0 View