Some SRR accessions cannot be downloaded by fasterq-dump in the SRA-toolkit?

08 August 2022 1 8K Report

Hi all,

I want to download some reference microbiome data from NCBI sequence Read Archive (SRA). I previously used fasterq-dump or fastq-dump to download the data, and the data were used to be downloaded successfully. However, I don't know why, I cannot download some SRR accession somehow recently. And my linux interface has shown errors as attached. They said the accession is invalid. So I also try other reference accession, and they showed the same errors again and again. Did anyone know what is the problem? Is it usual? Are there any other download tools for SRA accession recommended? Many thanks in advance! :-)

Kind regards,

Chiao-Jung

Adnan Majeed

visit these links below:

https://github.com/ncbi/sra-tools/issues/460

https://github.com/ncbi/sra-tools/issues/215

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