Hi all,
I have a data set comprised of 6000 dominant markers (binary data 1/0). My organism is haploid. I tried a few software (Migrate-n, Lamark and Genepop) to calculate the gene flow among my three populations. Migrate-n and Lamark do not support my dominant markers and Genepop cannot handle 6000 markers. I had a look at Treemix software also. As my knowledge is poor on Linux I could not follow it. But still trying to work on it. I would like to know whether there is another user friendly software to calculate the gene flow. Thanks :)
Considering the need of a user-friendly option, I would recommend you to read Geneland manual: https://i-pri.org/special/Biostatistics/Software/Geneland/, which works with a GUI. The input file data may look complex, but you can do the file conversion with PGDSpider or any other tool in the web. Maybe it could help.
Thanks Potshangbam Nongdam . I tried popgene but it accepts only around 1000 markers. I got around 5k. However, I used indirect methods (Fst and Ngst) to calculate gene migration. I used F3 and F4 stats in TreeMix as well.
Reagrds
Buddhika
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