Hi, I want to quantify the degree of color in IHC staining of cardiac slides. The whole cell is stained in brown and I need to quantify the differences between the degree of the color in 2 groups...
ImageJ has a plugin - colour deconvolution that might help you with this. But I'd read the developers explanation of the plugin, uses, limitations etc. carefully before deciding whether it's appropriate or not
First IHC stains are either membranous, cytoplasmic or nuclear expressions. The amount of stains determined the location of test expression which can be compared immunohistochemically