I designed many primers and they will work as a mixture. I am not sure whether those primers bind with each other (instead of template). I try to find some soft to check the quality of those primers but fail. So I want to do it with python myself. I do not know the algorithm or functions for primer design and test. Some advice?
Dear Hyde
For me, I think you can use free tools that provide by different company to design and check your primers. I recommend these sites for you :
www.oligoarchitect.com
http://eu.idtdna.com/calc/analyzer
Let me know if you need more
Good luck
Here I mean I add lots of primers(~100 genes) in one reaction. So I must make sure the every primer do not have Herero/self-Dimer with other primers. Now those tools always analyze one to one. I need a tool to analyze one to all. (I am not sure whether My Question is clear?)
Hi Hyde,
I have used PriDimer check software for checking primer dimerisation. It was very helpful, although I checked for only 7 sets of primers.
http://biocompute.bmi.ac.cn/MPprimer/primer_dimer.html
You can try it once. I hope it may help you.
- Badges
- Science topic
- Similar topics
- Computer Science and Engineering
- Programming Languages
- Python