Protein protein docking using Cluspro

01 January 1970 1 6K Report

I know that Cluspro is one of the finest tools for doing protein protein docking. I used the Cluspro web server to dock samples in protein protein docking benchmark version 4 and 5. But the results I obtained were not as good as expected. Can anyone advice me on this? What could be the reason for not getting quality structures as output?

Jitendra Kuldeep

First of all you have to check your starting input structure. Before docking just try to do a small MD run then dock it using cluspro.

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