Please can any one suggest a bioinformatic tool for predicting Gram positive bacteria(Staphylococcus aureus ) promoter region?

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Jiri Barta

Hi, please be more specific, What gene, what G+ species?

Isabel L. Correia

Hi,

I don´t kwon exactly what kind of tool do you need but I suggest this ones

Virtual footprinting- http://www.prodoric.de/vfp/vfp_promoter.php

Nice for find possible DNA binding sites and promoter (sigma binding sites)

and BPROM - http://linux1.softberry.com/berry.phtml?topic=bprom&group=programs&subgroup=gfindb

Predicts sig70/sigA binding site

However they are not specific for S. aureus maybe it could help.

Uzal Umar

Thank you Isabel , I sincerely believe they would work