NGS Data Analysis Training

More Maciej Grzybek's questions See All

How can I measure MMP-1 protein activity or protein level from liver tissue?

Instead of checking only the mRNA level, I want to check the active protein level of MMP-1 in Liver tissue from mice. How can I do that?

03 March 2021 1,763 2 View

Binary Logistic Generalized Linear Mixed model in SPSS. Is it doable?

I want to analyses the proportion of swimming sperm of three species of fish in two salinities. To analyse the proportion of swimming sperm in a Generalized Linear Model, I would use a Binary...

03 March 2021 2,297 3 View

Looking for Materials with high thermal expansion coefficient and high temperature resistance?

03 March 2021 8,272 1 View

Guidelines for survey (question type) analysis?

Hi. Please tell me what guidelines should i need to follow for questionaries' type research work in India. It is not hospital based work, we are conduction basic institutional based qualitative...

03 March 2021 2,037 3 View

What are the values needed for gabor filter's parameter for cifar10 data?

Hi, I implemented a code to gabor filter cifar10 data but the images after being filtered and stacked are not clear like the original images. I think the problem is in the way I am using the...

03 March 2021 6,317 1 View

Can we block unwanted images during the x-ray prediction?

i am try to classify the x-ray images. During classification , can i block unwanted images (except x-ray image).

03 March 2021 7,100 1 View

No title

03 March 2021 5,360 2 View

What techniques can I use to determine the miscibility of polymer blends?

The term miscibility refers to the single-phase state in thermodynamics. I do not mean the compatibility of different components. To determine the miscibility I know several techniques such as...

03 March 2021 4,107 4 View

Sample dilution for quantitative analysis using ELISA?

If the detection range is in ng/ml but the reference range is in ug/ml for a molecule or protein in serum or plasma .how to dilute and what is the initial volume to be taken for quantitative analysis

02 March 2021 7,670 3 View

The procedure compute?

02 March 2021 5,204 3 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

i have some problem with chtMultiRegionSimpleFoam

--> FOAM FATAL ERROR: Maximum number of iterations exceeded From function Foam::scalar Foam::species::thermo::T(Foam::scalar, Foam::scalar, Foam::scalar, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar) const) const [with Thermo = Foam::hConstThermo >; Type = Foam::sensibleEnthalpy; Foam::scalar = double; Foam::species::thermo = Foam::species::thermo >, Foam::sensibleEnthalpy>] in file /home/ubuntu/OpenFOAM/OpenFOAM-4.1/src/thermophysicalModels/specie/lnInclude/thermoI.H at line 66. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) at ??:? #1 Foam::error::abort() at ??:? #2 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::calculate() at ??:? #3 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::correct() at ??:? #4 ? at ??:? #5 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #6 ? at ??:?

24 March 2021 0 0 View

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View

Do we need to write protocol for a second study of a systematic review that has been registered and published?

I have conducted and published a systematic review and meta-analysis research with the topic related to public health and health pomotion (protocol was registed in PROSPERO). Now we want to...

03 March 2021 8,920 3 View

How to increase a model accuracy ?

dear community, my model is based feature extraction from non stationary signals using discrete Wavelet Transform and then using statistical features then machine learning classifiers in order to...

03 March 2021 6,994 5 View

Regina Lohajova Behulova

Hello,

try Life Technologies Customer Experience Centre in Darmstadt, Germany. Please contact customer training at > [email protected].

Regina

Maciej Grzybek

Cheers guys! what I found very interesting is this online short course run by Harvard. One more time many thanks for all the answers and suggestions.

http://informaticstraining.hms.harvard.edu/ngs

Naiara Rodriguez-Ezpeleta

Hi - you can have a look at: http://evomics.org/workshops/workshop-on-genomics/2014-workshop-on-genomics-cesky-krumlov/

You can Access last years presentations by changing the 2014 to 2013 in in te url. Best.

Christian Cole

You should also consider looking at Bioconductor (www.bioconductor.org) - it is a very mutare, open-source toolset for analysing NGS data (plus lots of other data types).

The run courses and make all their course material available online

http://www.bioconductor.org/help/course-materials/2013/

Michal Okoniewski

In Switzerland there are various courses run by the Swiss Institute of Bioinformatics, eg: http://www.bc2.ch/courses/RNASeqCourseBasel201401/

Also the core facility in Zurich happens to have some:

http://www.fgcz.ch/education

There is an RNAseq course run by prof Calogero in Torino : http://www.bioinformatica.unito.it/RNAseq.course.html

This is also a cyclic course that is repeated and adjusted to the current technologies.

David Langenberger

ecSeq Bioinformatics offers public and personalized Trainings for NGS data analysis.

Have a look at: www.ecseq.com

SUMMARY: Upcoming NGS data analysis workshops 2014

October 13-14, 2014: microRNA Analysis Using High-Throughput Sequencing

http://www.ecseq.com/workshops/workshop_2014-02.html

October 16-17, 2014: RNA-seq Bioinformatics: A Practical Introduction

http://www.ecseq.com/workshops/workshop_2014-01.html

October 20-21, 2014: DNA Methylation Analysis

http://www.ecseq.com/workshops/workshop_2014-03.html

October 23-24, 2014: Discovering standard and non-standard RNA transcripts

http://www.ecseq.com/workshops/workshop_2014-04.html

Find more information about our upcoming workshops on our website:http://www.ecseq.com

There will be a hands-on workshop in early march next year called 'A Beginner's Guide to NGS Data Analysis' (http://www.ecseq.com/workshops/workshop_2015-01.html)

UPDATE: 'A Beginner's Guide to NGS Data Analysis' - Early-bird registration ends today!

I want to remind you that the period of the early bird registration for our workshop 'A Beginner's Guide to NGS Data Analysis' is ending today. Don’t miss the chance to register during the time with the most favourable conditions. After January 15th the prices will increase by 10%.

Link: http://www.ecseq.com/workshops/workshop_2015-01.html

Feyzollah Hashemi-Gorji

DUBAI, UAE | 3 day training in Next Generation Sequencing Data Analysis and Gene/Genome Editing using CRISPR/Cas9

Dates : 18 - 20 April, 2018.

Istanbul, Turkey | Workshop in NGS & Crispr

October 8 – October 10

http://www.biodiscoverygroup.com/JSP/LifeSciences/Workshops.jsp

NGS courses (2018)

1- Next-Generation Sequencing Data Analysis: A Practical Introduction Quality Control, Read Mapping, Visualization and DNA Variant Analysis

Munich, Germany 21 - 23 August 2018

https://www.ecseq.com/workshops/workshop_2018-04-NGS-Next-Generation-Sequencing-Data-Analysis-A-Practical-Introduction

2- Introduction to Next Generation Sequencing

European Bioinformatics Institute (EMBL-EBI) - Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom 2nd - 5th Oct

https://www.ebi.ac.uk/training/events/2018/introduction-next-generation-sequencing-5

3- Analysis of High Throughput Sequencing Data

European Bioinformatics Institute (EMBL-EBI) - Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom 23rd - 26th Oct

https://www.ebi.ac.uk/training/events/2018/analysis-high-throughput-sequencing-data-1

Sunil Mondal

Can any body help me by providing information regarding training/workshop on NGS data analysis in India .... I'm also looking for an expert who can give me the guidance within India on the same...

Dear Sunil

You can find NGS workshops provided by Biodiscovery group in India.

http://www.biodiscoverygroup.com/JSP/LifeSciences/Workshops.jsp#

Fritz J Sedlazeck

I am teaching a workshop in Berlin (first week of October) about comparative genomics including Variant detection (SNP + SVs), Assembly vs. mapping strategies and variant annotation.

https://www.physalia-courses.org/courses-workshops/course34/