Friends, I have 24 morphological characters for 49 taxa. When i did a phylogenetic tree, I came across with low-measured bootstrap values. The problem here is poor alignment (because, morphological traits shouldn't be aligned). is there any suggestable way in that situation?
Abhijeet Singh
Of course, the alignment would not make sense because you are aligning different genes. If you want to make species tree, you need to do a concatenation/partition for your genes before making tree. Please get acclaimed with the principles before doing any analysis.
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