MD-Simulation tools for Windows?

More Vijay Nimbarte's questions See All

What will be the appropriate antibody to evaluate cMYC expression in HELA cell line?

11 December 2018 8,218 5 View

Please suggest appropriate cancer cell line for Farnnesyl Transferase Inhibitors?

Please suggest appropriate cancer cell line for Farnesyl Transferase Inhibitors

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Please suggest most appropriate PDB ID for MD simulations for cMYC G-Quadruplex stabilizing ligands?

11 December 2018 4,599 4 View

MD simulations for G-Quadruplex stabilizing agents?

Please suggest MD simulation software for windows interface.

10 November 2018 7,140 1 View

Which cancer cell line will be more appropriate to screen G-Quadruplex Stabilizing agents?

Dear Fellow Researchers, I would like to know which cancer cell line will be more appropriate for screening of G-Quadruplex stabilizing agents

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Thiazole orange displacement method for G-Quadruplex is valid way to evaluate compounds or not?

Dear All, Please share your experiences on thiazole displacement assay method to evaluate G-Quadruplex stabilzing agents?

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Guass view is not running in my windows system.Showing error that fail to establish directory file..Please share your experiences?

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MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What solvent can I used for Paal Knorr reaction between 6-amino hexanoic acid and 2.5 hexanedione?

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02 March 2021 4,443 2 View

Arena simulation - how do i model the following model in ARENA (see description) (new to ARENA)?

Hello, I'm fairly new to ARENA and I have the following problem: I have two queues in which, in each queue, a different order type arrives (both having an arrival rate of exponential 10). Order...

02 March 2021 2,431 3 View

Anatoly V Berezkin

GROMACS is the best free tool for atomistic MD simulations, like yours, if you will find some additional tools to visualize the results (PyMol, that works also after expiration of trial period (at least version 0.99rc6 did), https://pymol.org/2/). http://www.gromacs.org/Downloads/Installation_Instructions/Windows

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