Dear all,
I am looking for an online tool (or software) that can generate sequence-secondary structure diagrams of unpublished protein structures? I have found plenty of tools that either predict secondary structure or only work for PDB-deposited files.
Does anyone know of anything suitable? I know how to get secondary structure information from a PDB file in CCP4 MG but mainly looking for a way to plot it.
Thanks,
Paulina
It seems you need a tool to accept amino acid sequence input and generate a secondary structure diagram so these might be helpful
http://crdd.osdd.net/raghava/apssp2/
http://www.biogem.org/tool/chou-fasman/
http://bioinf.cs.ucl.ac.uk/psipred/
PredictProtein works really well for SS prediction and cartoon generation, very fast and easy to implement.
https://predictprotein.org/
None of these answers were accurate and http://crdd.osdd.net/raghava/apssp2/ is blocked as malware.
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