Is there any software that will help to present the read coverage in the form of graphs?Could anybody kindly help me to resolve the issue?

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Alejandro Sanchez-Flores

If you want to visualize the coverage on top of your genome, you can use Artemis. You load your genome and annotation in Artemis and a BAM file. There it will let you see not only globally but which regions are getting a higher or lower coverage.

Cheers

Naibin Duan

@Arjun Sahoo I have the exact same suggestion as Dong . Yes，IGV is a powerful tool to visualize the bam file to see the coverage profiling of you reads. You need input the refence genome fasta file,a bam file and an index file atthe same time.