I have installed the program in C drive and set this as C:\ligplot. This folder contains exe files and .cmd files of ligplot, ligonly, dimplot and dimonly. After installation I downloaded the example PDB 1A8A from RCSB. I kept this pdb file in pdb folder within ligplot folder. Then i started the ligplot command to execute the process as given in manual. There is one problem that says cannot find coordinate file. Can anybody help me in this regard. What is the problem?
Hi,
ligplot needs an explicit path to your pdb file. So, if your pdb file resides in ./pdb/, you have to invoke ligplot (or any other executable) pointing it to your file ./pdb/1A8A.pdb.
Regards.
Now try LigPlot+
https://www.ebi.ac.uk/thornton-srv/software/LigPlus/manual/manual.html
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