Is there a plug-in to draw haplotype networks from Geneious directly?

More Amaël Borzée's questions See All

Circular statistics - ecology - softwares, methods and recommendations?

Dear everyone, I have a dataset on the migration pattern of amphibians, including the angle at which the movements were initiated, and the distance covered. I am interested in finding out if...

10 November 2017 6,757 2 View

Phylogenetic analysis with PhyML or RaxML? or other?

I have one 560-bp long sequence for about 400 individuals. I understand that PhyML is faster, able to run with several model types, but non-partitioned, while RaxML can run with partitioned GTR...

09 October 2017 8,486 9 View

For 60+ year old tissue samples, potentially fixed in formalin, but preserved in alcohol, what is the best DNA extraction method?

I have old samples that may have been fixed in formalin, or not, there is no way to know, and then preserved in alcohol. I'm afraid the DNA extraction protocol for samples fixed in formalin may be...

03 April 2017 8,558 14 View

Hi! Would you want some data points from South Korea?

I'm conducting amphibians surveys in rice paddies in South Korea and I come across Black-faced Spoonbills quite regularly. I took note of all sightings from 2016, and I can send you all the data...

01 January 1970 9,612 1 View

Can I base on reverse DNA sequences to perform alignment, convert to amino acids and GenBank submission?

I have reverse sequences (AB1 format), can I base on reverse DNA sequences to perform nucleotide alignment, convert nucleotides to amino acids and deposit the sequence in GenBank database?

11 August 2024 5,138 1 View

I can't see the ssDNA band after performing asymmetric PCR. Is there any way to do this?

After performing symmetric PCR, PCR purification was performed. Afterwards, asymmetric PCR was performed using the PCR purification product as a template, but no ssDNA band was confirmed in the...

08 August 2024 1,668 3 View

Does crude extraction using NaOH and Tris work well with Fungi?

I'm trying to find a DNA extraction method for fungi that does not require equipment and heating. Is there anyone who can suggest an alternative option? Thank you

08 August 2024 4,733 2 View

Why after performing site directed mutagenesis ,I don't see any colony after transformation?

I want to introduce a point mutation (change in one nucleotide) into my gene of interest (DNA binding domain) I have designed primers as recommended on the Data sheet of the kit : -Both primers...

05 August 2024 9,059 3 View

Why did the authors extrapolate a phenotype that they experimentally proved in one bacterial strain across the whole genus of the organism?

I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...

05 August 2024 6,787 4 View

Does anyone have issues using Prepman Ultra reagent for MicroSeq ID bacterial, fungal and yeast sample preparation?

I have been attempting to extract DNA from Bacterial, Fungal and Yeast banked samples (>1e7 cells) using Prepman Ultra reagent and I seem to be struggling to obtain a sequence. Although the...

01 August 2024 2,079 0 View

Inquiry on Maximum Nucleic Acid Volume for 2.5 mL Liposome Solution?

I am currently working on a project involving liposomes and need to determine the maximum volume of siRNA that can be added to a 2.5 mL liposome solution with a total lipid concentration of 10...

30 July 2024 6,420 1 View

Seeking Software Recommendations for SELEX NGS Data Analysis?

I am looking for software to help analyze SELEX NGS data, including alignment, sequence enrichment, and other related tasks. Can anyone recommend suitable tools or software? Best wishes, Waleed

30 July 2024 1,061 5 View

CAD File of human's & rat's respiratory airways ?

Dear all, I am working on particle deposition in human's & rat's respiratory airways using CFD and I am looking for the 3D CAD file for my simulations (STEP or IGES format). If somone has such...

29 July 2024 1,092 2 View

Could you try using PeptiCloud and see if it's a useful tool for biology research?

PeptiCloud (www.pepticloud.com) is a bioinformatic platform that allows researchers to organize and share their data for their projects as well as collaborate with others in one place. Through...

28 July 2024 4,762 2 View

Sergio N. Stampar

I've searched and apparently it does not exist, unfortunately.. :(

Amaël Borzée

I reached the same answer, thank you for the confirmation. It would have been so convenient though!

Sadly, the latest version, Geneious 11.0.2, does not seem to be able to draw haplotype networks either.

Mohammadmehdi Eslamieh

I was looking for the same thing and it is NOT there!

I am hoping it will be integrated in a future (and hopefully soon) update...