I'd need a program able to perform dockings with small peptides, similar to Swissdock
(so which gives me fullfitness values and delta G values for each cluster calculated).
I already tried with Swissdock, but I need a second tool to confirm my results;
since Swissdock is thought to work with small ligands and not peptides, I think I could have different results.
thank you
1. You can use ZDOCK Server.
http://zdock.umassmed.edu/
2.Additionally you can also use Autodock Vina in Galaxy tools.
https://cheminformatics.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina/docking
Just have to create an account there and follow a tutorial here.
https://training.galaxyproject.org/training-material/topics/computational-chemistry/tutorials/cheminformatics/tutorial.html
3. http://flexpepdock.furmanlab.cs.huji.ac.il/
4. http://hdock.phys.hust.edu.cn/
5. http://zougrouptoolkit.missouri.edu/mdockpep/
If it is a protein-peptide docking, I would avoid Autodock VIna or swissdock.
There are several free docking softwares available.
1. Autodock
2. PyRx
3. haddock for protein-protein docking
4. cluspro for protein-protein docking
- Badges
- Science topic
- Similar topics
- Biological Science
- Biochemistry
- Biomolecules
- Peptides